PromH: Promoters identification using orthologous genomic sequences ...
Jul 1, 2003 · PromH uses linear discriminant functions that take into account conservation features and nucleotide sequences of promoter regions in pairs of orthologous genes.
SoftBerry - PROMH(W) HELP
PROMH (W) Recognition of human and animal Pol II promoters. (Transcription Start Site and TATA-box) Method description. To improve promoter identification accuracy achieved by TSSW program, we developed a new program, promH (W), by extending the TSSW program feature set.
PromH -- promoters identification using orthologous genomic sequences
Jun 15, 2005 · PromH uses linear discriminant functions that take into account conservation features and nucleotide sequences of promoter regions in pairs of orthologous genes. Results show that PromH identifies TSS positions significantly more accurately than any other published promoter prediction method.
Plant promoter prediction with confidence estimation - PMC
Feb 18, 2005 · Recently, we have developed a new promoter identification program, PromH, which using pairs of orthologous gene sequences (human and mouse) significantly improves the quality of promoter prediction . Having several annotated plant genomes we plan to select their orthologous genes and apply a plant-specific version of the PromHP program to ...
Identification of Promoter Regions and Regulatory Sites
Jan 1, 2010 · In this chapter we will describe successful algorithms implemented by us in a set of promoter prediction programs (TSSW, TSSG, Fprom, TSSP, TSSP-TCM and PromH). These tools use similar promoter features, but trained on different learning sets, or for different classes of …
(PDF) Solovyev, V.V. & Shahmuradov, I.A. PromH: Promoters ...
Aug 1, 2003 · PromH uses linear discriminant functions that take into account conservation features and nucleotide sequences of promoter regions in pairs of orthologous genes.
[PDF] PromH: promoters identification using orthologous …
Jul 1, 2003 · Results show that PromH identifies TSS positions significantly more accurately than any other published promoter prediction method. Accurate prediction of promoters is fundamental for understanding gene expression patterns, cell specificity and development.
PromH: promoters identification using orthologous genomic …
Jan 6, 2003 · PromH uses linear discriminant functions that take into account conservation features and nucleotide sequences of promoter regions in pairs of orthologous genes.
Solovyev VV, Shahmuradov IA. (2003) PromH: Promoters …
Jan 1, 2003 · PromH ( Solovyev and Shahmuradov, 2003) uses linear discriminant functions to evaluate the structural characteristics of DNA in the promoter regions and also detects conservation features and ...
TransPrise: a novel machine learning approach for eukaryotic
Jul 9, 2019 · PromH (Solovyev & Shahmuradov, 2003) used conservation of promoter functional components between orthologous genes to improve prediction of TSS. PromH was able to predict TSS within 10 nt for 90% of the TATA+ promoters and for 40% of TATA- genes, but only if there are highly similar homologous sequences from closely related species.